Data and software preservation for open science grid

Data grids provide several functionalities required by digital preservation systems, especially when massive amounts of data must be preserved, as in e science domains. Osf is a free, open platform to support your research and enable collaboration. Hildreth data and software preservation for open science. Site and resource topology data for the open science grid. Data and software preservation for open science daspos is a first attempt to establish a formal collaboration of physicists from experiments at the lhc and fermilabtevatron with experts in digital curation, heterogeneous highthroughput storage systems, largescale computing systems, and grid access and infrastructure. About the open science grid developed and operated by a consortium of universities, national laboratories, scientific collaborations, and software developers, the osg interoperates with multiple. Digital science launches grid, a new, global, open database. A site is then experienced through an immersive cave system, employing head tracking and independent hand remote control devices. Open science grid highthroughput computing resource.

Data and software preservation for open science daspos. Data preservation at the fermilab tevatron sciencedirect. The cern open data portal is a testimony to cerns policy of open access and open data. Data intensive scientific computing, douglas thain and kevin lannon, national science foundation, february 20162019. Labs and teams across the globe use osf to open their projects up to the scientific community. In close collaboration with science and campus communities as well as resource and software read more. Forwardthinking efforts for preservation are necessary now in order to achieve the relevant parameters, analysis paths and software to preserve the usefulness of these rich and varied data sets. In addition, rick currently serves as a visiting program officer for share with the association of research libraries. Hildreth used the example of the data and software preservation for open science daspos a multidisciplinary effort to create a template for. We use the term preservation to mean ensuring the continued usability of the data and software. No yearly fees, no complex licensing agreements, no hassle. Discover projects, data, materials, and collaborators on osf that might be helpful to your own research. Research data and it services university of california.

Data discovery and query optimization distributed processing and virtual archives but its not just for science. A large computing infrastructure consisting of tape storage, disk cache, and distributed grid computing for physics analysis with the tevatron data is present at fermilab. Using a grid for digital preservation springerlink. With the use of control software that constantly improves power consumption and optimizes costs, the future smart grid can improve security and reliability of the power grid. Mar 29, 2012 data and software preservation for open science daspos is a first attempt to establish a formal collaboration of physicists from experiments at the lhc and fermilabtevatron with experts in digital curation, heterogeneous highthroughput storage systems, largescale computing systems, and grid access and infrastructure. Data and software preservation for open science daspos, represents a first attempt to establish a formal collaboration tying together physicists from the cms and atlas experiments at the lhc and. The carpentries software, data, hpc carpentry courses fee pluralsight online training materials on popular programming. View rob gardners profile on linkedin, the worlds largest professional community. Dpsp digital preservation software platform description.

A combination of open source licensing and open development practices make it easier to preserve software by removing barriers to others taking on the preservation of the code. With over 15 years experience, rick has worked in software development, testing, sales, and management. The applicability of these services for hosting legacy precloud, distributed gis data. Osg connect provides tooling for users to create, publish and load custom images. Software preservation raising awareness of preservation. Models for information representation solutions to knowledge capture problems unification of technology, data, and metadata data grid.

Food, politics, and the loss of genetic diversity, cary fowler and pat mooney issue a. The open science grid encourages the concept of software portability. It often provides added value to data through quality assurance and metadata enhancement, and has an operational model based on data harmonization into a common schema. Install an oasis repo osg site documentation open science grid. The fermilab run ii data preservation project intends to keep this analysis capability sustained through the year 2020 and beyond. Open science grid github the worlds leading software. Through cern openlab, a unique publicprivate partnership, cern collaborates with leading ict companies and other research organisations to accelerate the development of cuttingedge ict solutions for the research community. Add your docker image to the open science grid image repository. The workshop will feature keynote speakers, lightning talks, demonstrations, and handson. Introduction to osg introduction to open science grid. Data and software preservation for open science daspos is a first attempt to establish a formal collaboration of physicists from experiments at the lhc and fermilabtevatron with experts. Grid has been broadly adopted in the digital science portfolio companies to facilitate data exchange, increase functionality, and support novel features.

The open science grid consortium is a nationwide facility and infrastructure enabling largescale highthroughput computing. Sloan foundation this project, an extension of the pkpdataverse integration, will develop a communitybased repository api that can work with many publishing systems and support various data. Open science grid contributes to genetic diversity and food security research in their influential 1990 book, shattering. Open science lab the open science lab osl was founded in 20 and focuses on the transition to open, inclusive and collaborative digital science.

Rob gardner research professor university of chicago. Institute for research and innovation in software for high. Open science and reproducible research have become pervasive goals. Data and software preservation for open science daspos is a first attempt to establish a formal collaboration of physicists from experiments at the lhc and fermilabtevatron with experts in digital. Large file format color xyz data is then realized within an open source software structure utilizing an indexed grid caching system kreylos et al.

While the archiving of hep data may require some hep. Data and software preservation for open science, daspos, represents an initial exploration of the key technical problems that must be solved to. It includes xena, dpr, checksum checker, and manifest maker. Data and software preservation for open science, daspos, represents an initial exploration of the key technical problems that must be solved to provide. These sites, primarily at universities and national labs, range in size from a few hundred to tens of thousands of cpu cores.

Consider using distributed environment modules to manage software. Data and software preservation for open science,michael. Chronopolis is a digital preservation data grid framework developed by the san diego supercomputer. Jan 23, 20 large file format color xyz data is then realized within an open source software structure utilizing an indexed grid caching system kreylos et al. This briefing presents the need for the curation, including the semantic annotation, of the processes that filter or transform data as part of a bioinformatics analysis. Asclaican collaborative digitization group, american library association 2011 annual conference, new orleans, louisiana. Open grid systems cimphony software and services for the. For more than 15 years, the open science grid osg has been offering the science community a fabric of distributed high throughput computing dhtc services. These sites, primarily at universities and national labs, range in size from a few. Top 15 in memory data grid platform including hazelcast imdg, infinispan, pivotal gemfire xd, oracle coherence, gridgain enterprise edition, ibm websphere application server, ehcache, xap, red hat jboss data grid, scaleout stateserver, galaxy, terracotta enterprise suite, ncache, websphere extreme scale are some of top in memory data grid platforms. Food, politics, and the loss of genetic diversity, cary fowler and pat mooney issue a warning. Site and resource topology data for the open science grid topology osg myosg python apache2.

About data and software preservation for open science daspos the daspos project represents a collective effort to explore the realization of a viable data, software, and computation preservation architecture for high energy physics hep. Nsf leads federal efforts in big data nsf national. Once data has been collected and distributed by the lhc computing grid, the open science grid assists physicists from. A digital data center that supports the preservation, discovery, use, reuse, and manipulation of scientific data objects supporting published research. Consequently, together with openaire, the open access infrastructure for. Overall, there are now the means and the organization for the preservation of raw crystallographic diffraction data via different types of archive, such as at universities, disciplinespecific repositories integrated resource for reproducibility in macromolecular crystallography, structural biology data grid, general public data. Cern is one of the most highly demanding computing environments in the research world. Dec 06, 2019 the carpentries software, data, hpc carpentry courses fee pluralsight online training materials on popular programming languages, developer tools, software practices, cloud environments and application development platforms.

A bridge from publishing words to publishing data pis. We utilise the power of open standards and modeldriven architectures to provide modern, scalable solutions to the challenges faced by utilities. Scientific computing, in the form of computer modeling and simulation, is a fundamental component of scientific discovery in the 21st century no matter the science being. Overview of the chronopolis digital preservation framework. Nevertheless, a smart grid cannot be widely deployed without considering several security requirements, namely, authentication, integrity, nonrepudiation, access control, and privacy. Data and software preservation for open science, daspos, represents an initial exploration of the key technical problems that must be solved to provide appropriate data, software and algorithmic preservation for hep, including the contexts necessary to understand, trust and reuse the data. Ever since releasing the world wide web software under an opensource model in 1994. Birn biomedical informatics research network nih sponsored grid. Create your own custom container image using docker and push it to docker hub. The body of knowledge about a piece of software is more likely to be manifested in electronic form, as opposed to being held in the heads of a few developers. Cms is also active in data and software preservation for open science, daspos9, which represents an initial exploration of the key technical problems that must be solved to provide appropriate data. Scientific computing, in the form of computer modeling and simulation, is a fundamental component of scientific discovery in the 21st century no matter the science being studied.

Chronopolis is a digital preservation data grid framework developed by the san diego supercomputer center at ucsd, the uc san diego libraries and their partners at the national center for atmospheric research ncar in colorado and the university of marylands institute for advanced computer. Open grid systems provides expertise in the areas of data management, information modelling, data transformation, data exchange technologies, visualisation and power system network analysis software. Data and software preservation for open science,michael hildreth, jaroslaw nabrzyski, mark neubauer, douglas thain, and robert gardner, national science foundation, august 20122015. An open architecture approach to virtual block stores is described in 44. In cooperation with the scientific community, tib is. Digital preservation is the active safekeeping of digitally stored information. The open science grid was created in order to facilitate data analysis from the large hadron collider, and about 70% of its 300,000 computinghours per day are dedicated to the analysis of data from particle colliders. Cms is also active in data and software preservation for open science, daspos9, which represents an initial exploration of the key technical problems that must be solved to provide appropriate data, software and algorithmic preservation for hep, including the contexts necessary to understand, trust and reuse the data. Open science technische informationsbibliothek tib. We think these benefits should be shared more widely in the scientific community to foster innovation and increase interoperability. Data and software preservation for open science, daspos, represents an initial exploration of the key technical problems that must be solved to provide appropriate data, software and algorithmic.

Teragrid nsf sponsored grid computing framework for open scientific discovery combining leadership class resources at eleven partner sites to create an integrated, persistent computational resource. Jun 27, 2017 to achieve the second and third goals, prof. The long term data preservation will become an even more critical issue as present experimental efforts evolve and the big data paradigm develops. Oasis the osg application software installation service is an infrastructure. It is necessary to provide a mechanism for osg virtual organizations to install software at sites.

The initial efforts of the us community to analyze the large volume of lhc data is being satisfied by the open science grid project, designed to facilitate such large and distributed experiments. The data grid has been developed in collaboration with the data science team at harvards institute for quantitative social science, and it conforms to progressive data science standards. Digital science launches grid, a new, global, open. The initial efforts of the us community to analyze the. The cern data centre is at the heart of wlcg, the first point of contact between experimental data from the lhc and the grid.

The open science grid consortium is an organization that administers a worldwide grid of technological resources called the open science grid, which facilitates distributed computing for scientific research. Without the genetic diversity from which farmers traditionally breed for. Rick has contributed to several collaborations such as daspos data and software preservation for open science. We propose the use of existing data grid solutions to build frameworks for digital preservation.

The open science grid osg is a consortium of research communities which facilitates. Open science grid a national, distributed computing. Implementing the data preservation and open access policy in cms. About data and software preservation for open science daspos. In the reference model for an open archival information system oais, data is. David minor, ardys kozbial, in a handbook of digital library economics, 20. Hildreth used the example of the data and software preservation for open science daspos a multidisciplinary effort to create a template for data conservation with the aim of producing automatic pizza freezers and automatic recipe regenerators. The open science grid consists of computing and storage elements at over 100 individual sites spanning the united states. Since its initial release, the osg compute element has provided an application software installation directory to virtual organizations, where. Implementing the data preservation and open access policy. As a part of the formalized efforts of library and archival sciences, digital preservation includes the practices required to ensure that information is safe from medium failures as well as software and hardware obsolescence. This is useful if your job requires some very specific software setup.

Ncptt 3d data recordation and immersive visualization. About the open science grid developed and operated by a consortium of universities, national laboratories, scientific collaborations, and software developers, the osg interoperates with multiple grid infrastructures throughout the world, allowing scientists to seamlessly harness highthroughput computing resources they may not have been able to. Open science grid contributes to genetic diversity and. The initial efforts of the us community to analyze the large volume of lhc data is being satisfied by the open science grid project, designed to. Apr 06, 2020 osg connect provides tooling for users to create, publish and load custom images. Citizen science grid computational research center. She is also heavily involved with the science gateways community institute and a copi for the conceptualization of a us research software sustainability institute. Data grids provide several functionalities required by digital preservation systems, especially when massive amounts of data must be preserved, as in escience domains. Digital preservation an overview sciencedirect topics. Senior personnel on data and software preservation for open. The dpsp is a collection of software applications which support the goal of digital preservation. Open science grid contributes to genetic diversity and food. The digital preservation software platform dpsp is free and open source software developed by the national archives of australia. Data publication with the structural biology data grid.